Microarray
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PeakFinder v.1.0
Locates peaks (cohesin binding sites) in yeast ChIP microarry data. PeakFinder software was developed to find cohesin binding sites represented by the peaks in yeast chromatin immunoprecipitation (ChIP) microarray data,
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GA Fuzzy Clustering v.1.0
GA Fuzzy Clustering is a clustering tool for microarray data. It implements fuzzy c-mean clustering algorithm improved with Genetic algorithm to search for global optimum.Input file format:: 1. This software uses a plain text file as input. 2. All
StepMiner v.1.0 Alpha
Analysis on timecourse microarray data. StepMiner is a new method for analyzing time course microarray data that extracts transitions between two states, up-regulated and down-regulated. For each gene,
MicroSim v.1.0 Beta
Two-dye microarray data sets analysis made easy. MicroSim is an analysis of the effect of systematic errors on the use of Microarray experiment.
PaGE (Patterns from Gene Expression) v.5.0.1
PaGE (Patterns from Gene Expression) is free downloadable program for microarray analisys. PaGE can be used to produce sets of differentially expressed genes with confidence measures attached.
AltAnalyze v.2.0.7.1 Development
AltAnalyze is a freely available, cross-platform software designed to assess changes in protein sequence, domain composition, and microRNA targeting from user RNA sequencing (RNASeq) or microarray data. To do this,
PhyloTrac v.2.0
PhyloTrac is a environmental sample analysis, is an software for the visualization and analysis of PhyloChip microarrays. The PhyloChip is a popular 16S rRNA gene microarray for microbial surveys,
Mayday v.2.11
Mayday is a workbench for visualization, analysis and storage of microarray data. It features a graphical user interface and supports the development and integration of existing and new analysis methods.
BAMarray v.3.0.0
Bayesian analysis of variance for microarrays. BAMarray implements the BAM tehcnique. BAM is a new statistical technique for detecting differentially expressing genes from microarray data.
Ginkgo v.1.0.1
Microarray Data Analysis Tool. Ginkgo is a spotted microarray data pre-processing platform featuring analysis functionalities for CGH and expression data.Ginkgo, formerly code-named as MIDASX,
ResqMi v.1.2.1
ResqMi is a new tool for analyzing, viualizing and editing Resequencing Microarray data. ResqMi is free software. Resequencing Microarray data analysis made easy.RESQMI is a utility application which allows you to: 1. Analyze the cell intensity data